HL_5VPO_043

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

5VPO|1|RA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_043 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0879

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5VPO|1|RA|U|305
5VPO|1|RA|U|306
5VPO|1|RA|G|307
5VPO|1|RA|G|308
5VPO|1|RA|G|309
5VPO|1|RA|A|310
5VPO|1|RA|A|311
5VPO|1|RA|G|312

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RY

50S ribosomal protein L24