HL_5VPO_082
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 5VPO|1|RA|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VPO_082 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1429
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5VPO|1|RA|G|1910
5VPO|1|RA|U|1911
5VPO|1|RA|A|1912
5VPO|1|RA|A|1913
5VPO|1|RA|C|1914
5VPO|1|RA|U|1915
5VPO|1|RA|A|1916
5VPO|1|RA|U|1917
5VPO|1|RA|A|1918
5VPO|1|RA|A|1919
5VPO|1|RA|C|1920
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QV
- P-site ASL SufA6
Coloring options: