HL_5VPO_084

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5VPO|1|RA|A|2030, 5VPO|1|RA|A|2031, 5VPO|1|RA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_084 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0764

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

5VPO|1|RA|G|2027
5VPO|1|RA|U|2028
5VPO|1|RA|G|2029
5VPO|1|RA|A|2030
5VPO|1|RA|A|2031
5VPO|1|RA|G|2032
5VPO|1|RA|A|2033
5VPO|1|RA|U|2034
5VPO|1|RA|G|2035
5VPO|1|RA|C|2036

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RV

50S ribosomal protein L21