HL_5VPO_088

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5VPO|1|RA|A|2268, 5VPO|1|RA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_088 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0578

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5VPO|1|RA|C|2264
5VPO|1|RA|U|2265
5VPO|1|RA|A|2266
5VPO|1|RA|A|2267
5VPO|1|RA|A|2268
5VPO|1|RA|A|2269
5VPO|1|RA|G|2270
5VPO|1|RA|G|2271
5VPO|1|RA|U|2272
5VPO|1|RA|A|2273
5VPO|1|RA|A|2274
5VPO|1|RA|C|2275
5VPO|1|RA|G|2276

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain RQ

50S ribosomal protein L16