HL_5VPO_178

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CAAG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_178 not in the Motif Atlas

Homologous match to HL_7RQB_039

Geometric discrepancy: 0.0741

The information below is about HL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38927.5

Basepair signature

cWW-F

Number of instances in this motif group

32

Unit IDs

5VPO|1|YA|C|1565
5VPO|1|YA|A|1566
5VPO|1|YA|A|1567
5VPO|1|YA|G|1568

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YD

50S ribosomal protein L2