HL_5VPP_006

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGGUAAUGGCC

Length

11 nucleotides

Bulged bases

5VPP|1|QA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_006 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.3966

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

5VPP|1|QA|G|258
5VPP|1|QA|G|259
5VPP|1|QA|G|260
5VPP|1|QA|U|261
5VPP|1|QA|A|262
5VPP|1|QA|A|263
5VPP|1|QA|U|264
5VPP|1|QA|G|265
5VPP|1|QA|G|266
5VPP|1|QA|C|267
5VPP|1|QA|C|268

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QQ

30S ribosomal protein S17

Chain QT

30S ribosomal protein S20