HL_5VPP_035
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- UGGCUACCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VPP_035 not in the Motif Atlas
- Homologous match to HL_7RQB_001
- Geometric discrepancy: 0.1189
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
5VPP|1|RA|U|59
5VPP|1|RA|G|60
5VPP|1|RA|G|61
5VPP|1|RA|C|62
5VPP|1|RA|U|63
5VPP|1|RA|A|64
5VPP|1|RA|C|65
5VPP|1|RA|C|66
5VPP|1|RA|U|67
5VPP|1|RA|G|68
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R2
- 50S ribosomal protein L29
- Chain R7
- 50S ribosomal protein L34
- Chain RX
- 50S ribosomal protein L23
Coloring options: