HL_5VPP_040

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5VPP|1|RA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_040 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1709

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5VPP|1|RA|G|194
5VPP|1|RA|A|195
5VPP|1|RA|A|196
5VPP|1|RA|A|197
5VPP|1|RA|C|198
5VPP|1|RA|A|199
5VPP|1|RA|U|200
5VPP|1|RA|C|201

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RP

50S ribosomal protein L15