HL_5VPP_041

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAGAAAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_041 not in the Motif Atlas

Geometric match to HL_6WBR_004

Geometric discrepancy: 0.347

The information below is about HL_6WBR_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5VPP|1|RA|G|224
5VPP|1|RA|A|225
5VPP|1|RA|G|226
5VPP|1|RA|A|227
5VPP|1|RA|A|228
5VPP|1|RA|A|229
5VPP|1|RA|U|230
5VPP|1|RA|C|231

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RP

50S ribosomal protein L15