HL_5VPP_055

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

5VPP|1|RA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_055 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.2856

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5VPP|1|RA|C|641
5VPP|1|RA|G|642
5VPP|1|RA|A|643
5VPP|1|RA|A|644
5VPP|1|RA|C|645
5VPP|1|RA|A|646
5VPP|1|RA|G|647

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R6

50S ribosomal protein L33

Chain R8

50S ribosomal protein L35

Chain RP

50S ribosomal protein L15