HL_5VPP_056
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUGAGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VPP_056 not in the Motif Atlas
- Homologous match to HL_7RQB_022
- Geometric discrepancy: 0.1427
- The information below is about HL_7RQB_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84085.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5VPP|1|RA|G|712
5VPP|1|RA|G|713
5VPP|1|RA|U|714
5VPP|1|RA|G|715
5VPP|1|RA|A|716
5VPP|1|RA|G|717
5VPP|1|RA|A|718
5VPP|1|RA|C|719
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QO
- 30S ribosomal protein S15
- Chain QQ
- 30S ribosomal protein S17
- Chain RD
- 50S ribosomal protein L2
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