HL_5VPP_060

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

5VPP|1|RA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_060 not in the Motif Atlas

Homologous match to HL_9DFE_024

Geometric discrepancy: 0.4418

The information below is about HL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5VPP|1|RA|C|884
5VPP|1|RA|C|885
5VPP|1|RA|C|886
5VPP|1|RA|A|887
5VPP|1|RA|C|888
5VPP|1|RA|C|889
5VPP|1|RA|A|890
5VPP|1|RA|G|892

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QS

30S ribosomal protein S19

Chain RG

50S ribosomal protein L5