HL_5VPP_084

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5VPP|1|RA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_084 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1898

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5VPP|1|RA|G|1949
5VPP|1|RA|G|1950
5VPP|1|RA|U|1951
5VPP|1|RA|A|1952
5VPP|1|RA|A|1953
5VPP|1|RA|G|1954
5VPP|1|RA|U|1955
5VPP|1|RA|U|1956
5VPP|1|RA|C|1957

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RO

50S ribosomal protein L14