HL_5VPP_109

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGGAAACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_109 not in the Motif Atlas

Geometric match to HL_6CZR_215

Geometric discrepancy: 0.2461

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

5VPP|1|XA|G|157
5VPP|1|XA|G|158
5VPP|1|XA|G|159
5VPP|1|XA|A|160
5VPP|1|XA|A|161
5VPP|1|XA|A|162
5VPP|1|XA|C|163
5VPP|1|XA|U|164

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20