HL_5VPP_113

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_113 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.1522

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5VPP|1|XA|U|296
5VPP|1|XA|G|297
5VPP|1|XA|A|298
5VPP|1|XA|G|299
5VPP|1|XA|A|300
5VPP|1|XA|G|301

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XE

30S ribosomal protein S5

Chain XQ

30S ribosomal protein S17