HL_5VPP_170

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

5VPP|1|YA|A|1095, 5VPP|1|YA|A|1096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_170 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.5973

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5VPP|1|YA|C|1092
5VPP|1|YA|G|1093
5VPP|1|YA|U|1094
5VPP|1|YA|A|1095
5VPP|1|YA|A|1096
5VPP|1|YA|U|1097
5VPP|1|YA|A|1098
5VPP|1|YA|G|1099

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YH

50S ribosomal protein L6