HL_5VPP_178

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

5VPP|1|YA|C|1493, 5VPP|1|YA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_178 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.2181

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

5VPP|1|YA|G|1492
5VPP|1|YA|C|1493
5VPP|1|YA|A|1494
5VPP|1|YA|A|1495
5VPP|1|YA|A|1496
5VPP|1|YA|U|1497
5VPP|1|YA|C|1498

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YD

50S ribosomal protein L2