HL_5VPP_198

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_198 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.142

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

5VPP|1|YA|C|2355
5VPP|1|YA|C|2356
5VPP|1|YA|U|2357
5VPP|1|YA|G|2358
5VPP|1|YA|C|2359
5VPP|1|YA|A|2360
5VPP|1|YA|A|2361
5VPP|1|YA|G|2362

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain Y8

50S ribosomal protein L35

Chain YP

50S ribosomal protein L15