HL_5VPP_202

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

5VPP|1|YA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_202 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.1086

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

5VPP|1|YA|U|2528
5VPP|1|YA|G|2529
5VPP|1|YA|A|2530
5VPP|1|YA|A|2531
5VPP|1|YA|G|2532
5VPP|1|YA|A|2533
5VPP|1|YA|A|2534
5VPP|1|YA|G|2535

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YH

50S ribosomal protein L6