HL_5VYC_021

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

UAUUCCCAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i1|U|1112
5VYC|1|i1|A|1113
5VYC|1|i1|U|1114
5VYC|1|i1|U|1115
5VYC|1|i1|C|1116
5VYC|1|i1|C|1117
5VYC|1|i1|C|1118
5VYC|1|i1|A|1119
5VYC|1|i1|U|1120
5VYC|1|i1|G|1121

Current chains

Chain i1

Human 18S ribosomal RNA

Nearby chains

Chain B1

40S ribosomal protein S3a

Chain b1

40S ribosomal protein S27