HL_5VYC_023

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_023 not in the Motif Atlas

Homologous match to HL_4V88_211

Geometric discrepancy: 0.2636

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5VYC|1|i1|U|1178
5VYC|1|i1|G|1179
5VYC|1|i1|C|1180
5VYC|1|i1|A|1181
5VYC|1|i1|A|1182
5VYC|1|i1|A|1183

Current chains

Chain i1

Human 18S ribosomal RNA

Nearby chains

Chain j1

60S ribosomal protein L41