HL_5VYC_043

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

5VYC|1|i2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_043 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.3661

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5VYC|1|i2|C|462
5VYC|1|i2|C|463
5VYC|1|i2|A|464
5VYC|1|i2|A|465
5VYC|1|i2|G|466
5VYC|1|i2|G|467

Current chains

Chain i2

Human 18S ribosomal RNA

Nearby chains

Chain G2

40S ribosomal protein S6

Chain f1

Ribosomal protein S27a