HL_5VYC_058

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_058 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.1094

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5VYC|1|i2|A|1353
5VYC|1|i2|G|1354
5VYC|1|i2|C|1355
5VYC|1|i2|G|1356
5VYC|1|i2|A|1357
5VYC|1|i2|U|1358

Current chains

Chain i2

Human 18S ribosomal RNA

Nearby chains

Chain A2

40S ribosomal protein SA

Chain C2

40S ribosomal protein S2