HL_5VYC_061

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

5VYC|1|i2|U|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_061 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.5363

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

5VYC|1|i2|C|1460
5VYC|1|i2|G|1461
5VYC|1|i2|U|1462
5VYC|1|i2|U|1463
5VYC|1|i2|C|1464
5VYC|1|i2|A|1465
5VYC|1|i2|G|1466

Current chains

Chain i2

Human 18S ribosomal RNA

Nearby chains

Chain R2

40S ribosomal protein S17

Chain g2

Receptor of activated protein C kinase 1