HL_5VYC_086
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- CGAUCAGAUACCG
- Length
- 13 nucleotides
- Bulged bases
- 5VYC|1|i3|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VYC_086 not in the Motif Atlas
- Geometric match to HL_1FIR_001
- Geometric discrepancy: 0.3761
- The information below is about HL_1FIR_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 18
Unit IDs
5VYC|1|i3|C|1053
5VYC|1|i3|G|1054
5VYC|1|i3|A|1055
5VYC|1|i3|U|1056
5VYC|1|i3|C|1057
5VYC|1|i3|A|1058
5VYC|1|i3|G|1059
5VYC|1|i3|A|1060
5VYC|1|i3|U|1061
5VYC|1|i3|A|1062
5VYC|1|i3|C|1063
5VYC|1|i3|C|1064
5VYC|1|i3|G|1065
Current chains
- Chain i3
- Human 18S ribosomal RNA
Nearby chains
- Chain O3
- 40S ribosomal protein S14
- Chain a3
- 40S ribosomal protein S26
- Chain k3
- Malignant T-cell-amplified sequence 1
- Chain l3
- Density-regulated protein
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