HL_5VYC_093

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GCGACCCCCGAGCGGUCGGCGUCC

Length

24 nucleotides

Bulged bases

5VYC|1|i3|C|1416, 5VYC|1|i3|C|1418, 5VYC|1|i3|G|1431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i3|G|1411
5VYC|1|i3|C|1412
5VYC|1|i3|G|1413
5VYC|1|i3|A|1414
5VYC|1|i3|C|1415
5VYC|1|i3|C|1416
5VYC|1|i3|C|1417
5VYC|1|i3|C|1418
5VYC|1|i3|C|1419
5VYC|1|i3|G|1420
5VYC|1|i3|A|1421
5VYC|1|i3|G|1422
5VYC|1|i3|C|1423
5VYC|1|i3|G|1424
5VYC|1|i3|G|1425
5VYC|1|i3|U|1426
5VYC|1|i3|C|1427
5VYC|1|i3|G|1428
5VYC|1|i3|G|1429
5VYC|1|i3|C|1430
5VYC|1|i3|G|1431
5VYC|1|i3|U|1432
5VYC|1|i3|C|1433
5VYC|1|i3|C|1434

Current chains

Chain i3

Human 18S ribosomal RNA

Nearby chains

Chain Q3

40S ribosomal protein S16

Chain T3

40S ribosomal protein S19