HL_5VYC_116
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- GACCGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAGGC
- Length
- 38 nucleotides
- Bulged bases
- 5VYC|1|i4|C|877, 5VYC|1|i4|G|891
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5VYC|1|i4|G|874
5VYC|1|i4|A|875
5VYC|1|i4|C|876
5VYC|1|i4|C|877
5VYC|1|i4|G|878
5VYC|1|i4|C|879
5VYC|1|i4|G|880
5VYC|1|i4|G|881
5VYC|1|i4|U|882
5VYC|1|i4|U|883
5VYC|1|i4|C|884
5VYC|1|i4|U|885
5VYC|1|i4|A|886
5VYC|1|i4|U|887
5VYC|1|i4|U|888
5VYC|1|i4|U|889
5VYC|1|i4|U|890
5VYC|1|i4|G|891
5VYC|1|i4|U|892
5VYC|1|i4|U|893
5VYC|1|i4|G|894
5VYC|1|i4|G|895
5VYC|1|i4|U|896
5VYC|1|i4|U|897
5VYC|1|i4|U|898
5VYC|1|i4|U|899
5VYC|1|i4|C|900
5VYC|1|i4|G|901
5VYC|1|i4|G|902
5VYC|1|i4|A|903
5VYC|1|i4|A|904
5VYC|1|i4|C|905
5VYC|1|i4|U|906
5VYC|1|i4|G|907
5VYC|1|i4|A|908
5VYC|1|i4|G|909
5VYC|1|i4|G|910
5VYC|1|i4|C|911
Current chains
- Chain i4
- Human 18S ribosomal RNA
Nearby chains
- Chain B2
- 40S ribosomal protein S3a
- Chain G4
- 40S ribosomal protein S6
- Chain H4
- 40S ribosomal protein S7
- Chain L4
- 40S ribosomal protein S11
- Chain O2
- 40S ribosomal protein S14
Coloring options: