HL_5VYC_133

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

5VYC|1|i5|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_133 not in the Motif Atlas

Homologous match to HL_4V88_186

Geometric discrepancy: 0.1312

The information below is about HL_4V88_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.2

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5VYC|1|i5|G|7
5VYC|1|i5|U|8
5VYC|1|i5|U|9
5VYC|1|i5|G|10
5VYC|1|i5|A|11
5VYC|1|i5|U|12
5VYC|1|i5|C|13
5VYC|1|i5|C|14
5VYC|1|i5|U|15
5VYC|1|i5|G|16
5VYC|1|i5|C|17

Current chains

Chain i5

Human 18S ribosomal RNA

Nearby chains

Chain C5

40S ribosomal protein S2

Chain X5

40S ribosomal protein S23