HL_5VYC_136

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

5VYC|1|i5|U|198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_136 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2782

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5VYC|1|i5|C|195
5VYC|1|i5|C|196
5VYC|1|i5|U|197
5VYC|1|i5|U|198
5VYC|1|i5|C|199
5VYC|1|i5|G|200
5VYC|1|i5|C|201
5VYC|1|i5|G|202
5VYC|1|i5|G|203
5VYC|1|i5|G|204

Current chains

Chain i5

Human 18S ribosomal RNA

Nearby chains

Chain F4

40S ribosomal protein S5

Chain I5

40S ribosomal protein S8

Chain Z4

40S ribosomal protein S25