HL_5VYC_163
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 5VYC|1|i5|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VYC_163 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.4089
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5VYC|1|i5|G|1658
5VYC|1|i5|U|1659
5VYC|1|i5|C|1660
5VYC|1|i5|A|1661
5VYC|1|i5|U|1662
5VYC|1|i5|A|1663
5VYC|1|i5|A|1664
5VYC|1|i5|G|1665
5VYC|1|i5|C|1666
Current chains
- Chain i5
- Human 18S ribosomal RNA
Nearby chains
- Chain Q5
- 40S ribosomal protein S16
- Chain T5
- 40S ribosomal protein S19
- Chain U5
- 40S ribosomal protein S20
- Chain d5
- 40S ribosomal protein S29
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