HL_5VYC_170

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

5VYC|1|i6|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_170 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1987

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5VYC|1|i6|G|288
5VYC|1|i6|G|289
5VYC|1|i6|U|290
5VYC|1|i6|G|291
5VYC|1|i6|A|292
5VYC|1|i6|C|293
5VYC|1|i6|U|294
5VYC|1|i6|C|295

Current chains

Chain i6

Human 18S ribosomal RNA

Nearby chains

Chain E6

40S ribosomal protein S4, X isoform

Chain G6

40S ribosomal protein S6

Chain L6

40S ribosomal protein S11