HL_5VYC_177

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GGACUCUUUCGAGGCCC

Length

17 nucleotides

Bulged bases

5VYC|1|i6|U|541, 5VYC|1|i6|U|542, 5VYC|1|i6|C|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i6|G|534
5VYC|1|i6|G|535
5VYC|1|i6|A|536
5VYC|1|i6|C|537
5VYC|1|i6|U|538
5VYC|1|i6|C|539
5VYC|1|i6|U|540
5VYC|1|i6|U|541
5VYC|1|i6|U|542
5VYC|1|i6|C|543
5VYC|1|i6|G|544
5VYC|1|i6|A|545
5VYC|1|i6|G|546
5VYC|1|i6|G|547
5VYC|1|i6|C|548
5VYC|1|i6|C|549
5VYC|1|i6|C|550

Current chains

Chain i6

Human 18S ribosomal RNA

Nearby chains

Chain J6

40S ribosomal protein S9

Chain e6

40S ribosomal protein S30