HL_5VYC_226

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GCCCGAGCCGC

Length

11 nucleotides

Bulged bases

5VYC|1|i6|G|836, 5VYC|1|i6|G|838, 5VYC|1|i6|C|839, 5VYC|1|i6|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_226 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2681

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5VYC|1|i6|G|832
5VYC|1|i6|C|833
5VYC|1|i6|C|834
5VYC|1|i6|C|835
5VYC|1|i6|G|836
5VYC|1|i6|A|837
5VYC|1|i6|G|838
5VYC|1|i6|C|839
5VYC|1|i6|C|840
5VYC|1|i6|G|841
5VYC|1|i6|C|842

Current chains

Chain i6

Human 18S ribosomal RNA

Nearby chains

Chain E6

40S ribosomal protein S4, X isoform

Chain Y6

40S ribosomal protein S24