HL_5VYC_228

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACUUCUUAGAGG

Length

56 nucleotides

Bulged bases

5VYC|1|i6|U|1397, 5VYC|1|i6|C|1403, 5VYC|1|i6|U|1404, 5VYC|1|i6|C|1412, 5VYC|1|i6|C|1416, 5VYC|1|i6|C|1418, 5VYC|1|i6|C|1423, 5VYC|1|i6|G|1431, 5VYC|1|i6|C|1436, 5VYC|1|i6|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i6|C|1395
5VYC|1|i6|A|1396
5VYC|1|i6|U|1397
5VYC|1|i6|G|1398
5VYC|1|i6|C|1399
5VYC|1|i6|U|1400
5VYC|1|i6|A|1401
5VYC|1|i6|A|1402
5VYC|1|i6|C|1403
5VYC|1|i6|U|1404
5VYC|1|i6|A|1405
5VYC|1|i6|G|1406
5VYC|1|i6|U|1407
5VYC|1|i6|U|1408
5VYC|1|i6|A|1409
5VYC|1|i6|C|1410
5VYC|1|i6|G|1411
5VYC|1|i6|C|1412
5VYC|1|i6|G|1413
5VYC|1|i6|A|1414
5VYC|1|i6|C|1415
5VYC|1|i6|C|1416
5VYC|1|i6|C|1417
5VYC|1|i6|C|1418
5VYC|1|i6|C|1419
5VYC|1|i6|G|1420
5VYC|1|i6|A|1421
5VYC|1|i6|G|1422
5VYC|1|i6|C|1423
5VYC|1|i6|G|1424
5VYC|1|i6|G|1425
5VYC|1|i6|U|1426
5VYC|1|i6|C|1427
5VYC|1|i6|G|1428
5VYC|1|i6|G|1429
5VYC|1|i6|C|1430
5VYC|1|i6|G|1431
5VYC|1|i6|U|1432
5VYC|1|i6|C|1433
5VYC|1|i6|C|1434
5VYC|1|i6|C|1435
5VYC|1|i6|C|1436
5VYC|1|i6|C|1437
5VYC|1|i6|A|1438
5VYC|1|i6|A|1439
5VYC|1|i6|C|1440
5VYC|1|i6|U|1441
5VYC|1|i6|U|1442
5VYC|1|i6|C|1443
5VYC|1|i6|U|1444
5VYC|1|i6|U|1445
5VYC|1|i6|A|1446
5VYC|1|i6|G|1447
5VYC|1|i6|A|1448
5VYC|1|i6|G|1449
5VYC|1|i6|G|1450

Current chains

Chain i6

Human 18S ribosomal RNA

Nearby chains

Chain D6

40S ribosomal protein S3

Chain Q6

40S ribosomal protein S16

Chain R6

40S ribosomal protein S17

Chain T6

40S ribosomal protein S19

Chain U6

40S ribosomal protein S20

Chain g6

Receptor of activated protein C kinase 1