HL_5VYC_231

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCG

Length

35 nucleotides

Bulged bases

5VYC|1|i2|G|1754, 5VYC|1|i2|C|1755, 5VYC|1|i2|C|1762, 5VYC|1|i2|G|1763, 5VYC|1|i2|G|1764, 5VYC|1|i2|C|1765, 5VYC|1|i2|C|1766, 5VYC|1|i2|C|1767, 5VYC|1|i2|A|1768, 5VYC|1|i2|C|1769, 5VYC|1|i2|G|1770, 5VYC|1|i2|G|1771, 5VYC|1|i2|C|1772, 5VYC|1|i2|C|1773, 5VYC|1|i2|C|1774, 5VYC|1|i2|A|1781, 5VYC|1|i2|G|1782, 5VYC|1|i2|C|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i2|C|1750
5VYC|1|i2|C|1751
5VYC|1|i2|C|1752
5VYC|1|i2|C|1753
5VYC|1|i2|G|1754
5VYC|1|i2|C|1755
5VYC|1|i2|C|1756
5VYC|1|i2|G|1757
5VYC|1|i2|G|1758
5VYC|1|i2|G|1759
5VYC|1|i2|G|1760
5VYC|1|i2|U|1761
5VYC|1|i2|C|1762
5VYC|1|i2|G|1763
5VYC|1|i2|G|1764
5VYC|1|i2|C|1765
5VYC|1|i2|C|1766
5VYC|1|i2|C|1767
5VYC|1|i2|A|1768
5VYC|1|i2|C|1769
5VYC|1|i2|G|1770
5VYC|1|i2|G|1771
5VYC|1|i2|C|1772
5VYC|1|i2|C|1773
5VYC|1|i2|C|1774
5VYC|1|i2|U|1775
5VYC|1|i2|G|1776
5VYC|1|i2|G|1777
5VYC|1|i2|C|1778
5VYC|1|i2|G|1779
5VYC|1|i2|G|1780
5VYC|1|i2|A|1781
5VYC|1|i2|G|1782
5VYC|1|i2|C|1783
5VYC|1|i2|G|1784

Current chains

Chain i2

Human 18S ribosomal RNA

Nearby chains

Chain G2

40S ribosomal protein S6

Chain P5

40S ribosomal protein S15

Chain S5

40S ribosomal protein S18