HL_5W4K_030

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

5W4K|1|1A|U|1220, 5W4K|1|1A|G|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5W4K_030 not in the Motif Atlas

Homologous match to HL_7RQB_031

Geometric discrepancy: 0.336

The information below is about HL_7RQB_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_94651.3

Basepair signature

cWW-tSS

Number of instances in this motif group

6

Unit IDs

5W4K|1|1A|G|1217
5W4K|1|1A|G|1218
5W4K|1|1A|A|1219
5W4K|1|1A|U|1220
5W4K|1|1A|G|1221
5W4K|1|1A|A|1222
5W4K|1|1A|C|1223

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains