HL_5W4K_173

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

C(2MU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 2MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5W4K_173 not in the Motif Atlas

Homologous match to HL_7RQB_062

Geometric discrepancy: 0.102

The information below is about HL_7RQB_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5W4K|1|2A|C|2551
5W4K|1|2A|2MU|2552
5W4K|1|2A|G|2553
5W4K|1|2A|U|2554
5W4K|1|2A|U|2555
5W4K|1|2A|C|2556
5W4K|1|2A|G|2557

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2w

Transfer RNA; tRNA