3D structure

PDB id
5WDT (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu H84A complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5WDT_056 not in the Motif Atlas
Homologous match to HL_5J7L_191
Geometric discrepancy: 0.1165
The information below is about HL_5J7L_191
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

5WDT|1|A|C|2374
5WDT|1|A|G|2375
5WDT|1|A|A|2376
5WDT|1|A|A|2377
5WDT|1|A|A|2378
5WDT|1|A|G|2379

Current chains

Chain A
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L33
Chain O
50S ribosomal protein L18

Coloring options:


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