HL_5WE6_118

3D structure

PDB id

5WE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGUAACGGCU

Length

11 nucleotides

Bulged bases

5WE6|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WE6_118 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.3714

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

5WE6|1|a|G|258
5WE6|1|a|G|259
5WE6|1|a|G|260
5WE6|1|a|U|261
5WE6|1|a|A|262
5WE6|1|a|A|263
5WE6|1|a|C|264
5WE6|1|a|G|265
5WE6|1|a|G|266
5WE6|1|a|C|267
5WE6|1|a|U|268

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20