HL_5WF0_010

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5WF0|1|A|G|329, 5WF0|1|A|A|330, 5WF0|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WF0_010 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.119

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5WF0|1|A|G|327
5WF0|1|A|U|328
5WF0|1|A|G|329
5WF0|1|A|A|330
5WF0|1|A|C|331
5WF0|1|A|A|332
5WF0|1|A|G|333
5WF0|1|A|C|334
5WF0|1|A|C|335

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24