HL_5WF0_030

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WF0_030 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.0948

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5WF0|1|A|G|1281
5WF0|1|A|U|1282
5WF0|1|A|G|1283
5WF0|1|A|A|1284
5WF0|1|A|A|1285
5WF0|1|A|A|1286
5WF0|1|A|A|1287
5WF0|1|A|G|1288
5WF0|1|A|C|1289

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22