HL_5WFK_077

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WFK_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1175

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5WFK|1|a|A|320
5WFK|1|a|A|321
5WFK|1|a|C|322
5WFK|1|a|U|323
5WFK|1|a|G|324
5WFK|1|a|A|325
5WFK|1|a|G|326
5WFK|1|a|A|327
5WFK|1|a|C|328
5WFK|1|a|A|329
5WFK|1|a|C|330
5WFK|1|a|G|331
5WFK|1|a|G|332
5WFK|1|a|U|333

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20