HL_5WFS_052

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5WFS|1|A|A|2268, 5WFS|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WFS_052 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0682

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5WFS|1|A|C|2264
5WFS|1|A|U|2265
5WFS|1|A|A|2266
5WFS|1|A|A|2267
5WFS|1|A|A|2268
5WFS|1|A|G|2269
5WFS|1|A|A|2270
5WFS|1|A|G|2271
5WFS|1|A|U|2272
5WFS|1|A|A|2273
5WFS|1|A|A|2274
5WFS|1|A|C|2275
5WFS|1|A|G|2276

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27