HL_5WFS_075

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGGUAACGGCUC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WFS_075 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.3307

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

5WFS|1|a|G|257
5WFS|1|a|G|258
5WFS|1|a|G|259
5WFS|1|a|G|260
5WFS|1|a|U|261
5WFS|1|a|A|262
5WFS|1|a|A|263
5WFS|1|a|C|264
5WFS|1|a|G|265
5WFS|1|a|G|266
5WFS|1|a|C|267
5WFS|1|a|U|268
5WFS|1|a|C|269

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20