HL_5WIS_160

3D structure

PDB id

5WIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5WIS|1|2A|A|2030, 5WIS|1|2A|A|2031, 5WIS|1|2A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WIS_160 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0494

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

5WIS|1|2A|G|2027
5WIS|1|2A|U|2028
5WIS|1|2A|G|2029
5WIS|1|2A|A|2030
5WIS|1|2A|A|2031
5WIS|1|2A|G|2032
5WIS|1|2A|A|2033
5WIS|1|2A|U|2034
5WIS|1|2A|G|2035
5WIS|1|2A|C|2036

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3