HL_5WIS_171

3D structure

PDB id

5WIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGAAGAAGG

Length

10 nucleotides

Bulged bases

5WIS|1|2A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WIS_171 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3425

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

42

Unit IDs

5WIS|1|2A|C|2527
5WIS|1|2A|U|2528
5WIS|1|2A|G|2529
5WIS|1|2A|A|2530
5WIS|1|2A|A|2531
5WIS|1|2A|G|2532
5WIS|1|2A|A|2533
5WIS|1|2A|A|2534
5WIS|1|2A|G|2535
5WIS|1|2A|G|2536

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6