HL_81376.4

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9	1-9	2-8	3-6
1	HL_1B23_004	1B23	0.5827	tRNA anticodon loop	R	tRNA	A	31	PSU	32	U	33	G	34	C	35	A	36	MIA	37	A	38	PSU	39	ncWW
2	HL_4WSM_209	4WSM	0.3768	tRNA anticodon loop	1K	tRNA	C	32	U	33	U	34	G	35	A	36	G	37	1MG	38	PSU	39	G	40	cWW
3	HL_1N32_033	1N32	0.3784	tRNA anticodon loop	Y	ANTICODON STEM-LOOP OF LEU-2 TRANSFER RNA	C	31	U	32	U	33	G	34	A	35	G	36	G	37	PSU	38	G	39	cWW
4	HL_5E81_235	5E81	0.2971	tRNA anticodon loop	1K	tRNA	A	31	C	32	U	33	U8U	34	U	35	U	36	T6A	37	A	38	PSU	39	cWW	ncWW
5	HL_1FIR_005	1FIR	0.3002	tRNA anticodon loop	A	tRNA	A	31	C	32	U	33	70U	34	U	35	U	36	12A	37	A	38	PSU	39	cWW	ncWB
6	HL_4V9K_034	4V9K	0.2657	tRNA anticodon loop	AW	tRNA	A	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	U	39	cWW	ncWW
7	HL_7QR4_001	7QR4	0.1854	Anticodon loop related	B	Mammalian CPEB3 ribozyme	G	19	U	20	U	21	C	22	A	23	C	24	G	25	U	26	C	27	cWW
8	HL_7QR3_001	7QR3	0.1641	Anticodon loop related	C	Mammalian CPEB3 ribozyme	G	19	U	20	U	21	C	22	A	23	C	24	G	25	U	26	C	27	cWW		ntSHa
9	HL_7VNV_002	7VNV	0.1327	tRNA anticodon loop	A	tRNA	C	31	OMC	32	U	33	OMU	34	A	35	C	36	A	37	A	38	G	39	cWW		ntSHa
10	HL_6UFM_002	6UFM	0.1218	tRNA anticodon loop	A	tRNA	G	32	C	33	U	34	G	35	A	36	U	37	A	38	A	39	C	40	cWW
11	HL_9MTS_102	9MTS	0.0881	tRNA anticodon loop	1x	tRNA	A	31	PSU	32	U	33	G	34	C	35	A	36	MIA	37	A	38	PSU	39	cWW
12	HL_8B0X_031	8B0X	0.0000	tRNA anticodon loop (H)	Z	tRNA	G	31	C	32	U	33	U	34	A	35	C	36	A	37	A	38	C	39	cWW		ntSHa
13	HL_9O3W_078	9O3W	0.0936	tRNA anticodon loop (H)	Pt	tRNA	G	31	C	32	U	33	C	34	U	35	C	36	A	37	C	38	C	39	cWW	ncWB	ntSHa
14	HL_4V9Q_214	4V9Q	0.1307	tRNA anticodon loop	DV	tRNA	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
15	HL_4TUE_142	4TUE	0.1084	tRNA anticodon loop (H)	XV	tRNA	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
16	HL_5J8B_109	5J8B	0.0967	tRNA anticodon loop (H)	x	tRNA	G	31	5MC	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
17	HL_6CFJ_107	6CFJ	0.0909	tRNA anticodon loop	1x	tRNA	G	31	5MC	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
18	HL_4V50_137	4V50	0.1352	tRNA anticodon loop	CW	PHE TRNA (UNMODIFIED BASES)	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW	ncWW
19	HL_4WT8_216	4WT8	0.1350	tRNA anticodon loop	D4	tRNA	G	32	C	33	U	34	C	35	A	36	U	37	A	38	A	39	C	40	cWW
20	HL_6GYV_002	6GYV	0.1956		A	Lariat-capping ribozyme	G	49	C	50	U	51	A	52	A	53	U	54	C	55	A	56	C	57	cWW	ncWW
21	HL_9J4O_001	9J4O	0.2020		A	tRNA	A	31	C	32	U	33	U	34	A	35	A	36	A	37	A	38	U	39	cWW
22	HL_6UFH_007	6UFH	0.2021	tRNA anticodon loop	B	tRNA	G	32	C	33	U	34	G	35	A	36	U	37	A	38	A	39	C	40	cWW
23	HL_6UFG_007	6UFG	0.1317	tRNA anticodon loop	B	tRNA	G	32	C	33	U	34	G	35	A	36	U	37	A	38	A	39	C	40	cWW	ncWW
24	HL_7OSM_116	7OSM	0.2053	tRNA anticodon loop	ASIT	tRNA	A	31	U	32	U	33	G	34	A	35	A	36	YG	37	A	38	U	39	ncWW
25	HL_1N33_036	1N33	0.2368	tRNA anticodon loop	Y	ANTICODON STEM-LOOP OF SER TRANSFER RNA	C	31	C	32	U	33	G	34	G	35	A	36	A	37	A	38	G	39	cWW
26	HL_2UUC_033	2UUC	0.1932		Y	RNA (17-mer)	C	31	C	32	U	33	CM0	34	A	35	C	36	6MZ	37	A	38	G	39	cWW
27	HL_5IBB_210	5IBB	0.1761	tRNA anticodon loop	1L	tRNA	C	31	C	32	U	33	U	34	A	35	C	36	A	37	A	38	G	39	cWW	ncWW
28	HL_7U2J_104	7U2J	0.1381		1w	tRNA	C	31	U	32	U	33	C	34	C	35	C	36	A	37	A	38	G	39	cWW
29	HL_4YCO_002	4YCO	0.2095	tRNA anticodon loop	D	tRNA	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
30	HL_6GSK_203	6GSK	0.2335	tRNA anticodon loop	1K	tRNA	C	31	U	32	U	33	G	34	G	35	U	36	AET	37	A	38	G	39	cWW
31	HL_6CAQ_034	6CAQ	0.2239	tRNA anticodon loop	W	RNA (15-mer)	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
32	HL_4LNT_144	4LNT	0.2355	tRNA anticodon loop	XY	messenger RNA	G	31	U	32	U	33	C	34	G	35	G	36	1MG	37	A	38	C	39	cWW
33	HL_3TUP_002	3TUP	0.2510	tRNA anticodon loop	T	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
34	HL_7K98_002	7K98	0.2901	tRNA anticodon loop	C	tRNA	C	32	C	33	U	34	G	35	A	36	A	37	A	38	A	39	G	40	cWW	ntSH
35	HL_4R4V_001	4R4V	0.2373	Anticodon loop related	A	VS ribozyme RNA	C	626	G	627	U	628	C	629	G	630	U	631	C	632	G	633	G	634	cWW	tSH
36	HL_5T83_002	5T83	0.2475	Anticodon loop related	A	Guanidine-I riboswitch	U	56	U	57	U	58	C	59	A	60	C	61	A	62	A	63	A	64	cWW		ntSHa
37	HL_1U0B_002	1U0B	0.2397	tRNA anticodon loop	A	tRNA	A	31	U	32	U	33	G	34	C	35	A	36	A	37	A	38	U	39	cWW
38	HL_3WFS_002	3WFS	0.2709	tRNA anticodon loop	A	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	ncWW	ncWW
39	HL_1XNQ_034	1XNQ	0.3986	tRNA anticodon loop	X	Anticodon tRNA	G	31	C	32	U	33	I	34	C	35	G	36	A	37	A	38	C	39	cWW
40	HL_4MGN_003	4MGN	0.3600	tRNA anticodon loop	B	tRNA	C	30	U	31	U	32	G	33	C	34	C	35	A	36	A	37	G	38	cWW
41	HL_3W3S_002	3W3S	0.4097	tRNA anticodon loop	B	Selenocysteine transfer RNA	A	31	C	32	U	33	U	34	C	35	A	36	A	37	A	38	U	39	cWW	ncWW
42	HL_4WZD_242	4WZD	0.4897	tRNA anticodon loop	3L	tRNA	A	32\|\|\|\|P_1	C	33\|\|\|\|P_1	U	34\|\|\|\|P_1	QUO	35\|\|\|\|P_1	U	36\|\|\|\|P_1	A	37\|\|\|\|P_1	MIA	38\|\|\|\|P_1	A	39\|\|\|\|P_1	PSU	40\|\|\|\|P_1	cWW	ncWW
43	HL_1N78_002	1N78	0.3701	tRNA anticodon loop	C	tRNA	C	531	C	532	U	533	C	534	U	535	C	536	A	537	A	538	G	539	cWW	ncWW
44	HL_5E81_220	5E81	0.5557	tRNA anticodon loop	3L	tRNA	A	31	C	32	U	33	U	34	U	35	U	36	A	37	A	38	U	39	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCUCAUAAC	4
GCUGAUAAC	3
A(PSU)UGCA(MIA)A(PSU)	2
GUUCACGUC	2
GUCAUAAC	2
AUUGAAAAU	2
ACUGAAAAU	2
CUUGAGG	1
CUUGAGG(PSU)G	1
ACU(U8U)UU(T6A)A(PSU)	1
ACU(70U)UU(12A)A(PSU)	1
ACUCAUAAU	1
CUACAAG	1
GCUUACAAC	1
GCUCUCACC	1
GCUAAUCAC	1
ACUUAAAAU	1
AUUGAA(YG)AU	1
CCUGGAAAG	1
CCUACAG	1
CCUUACAAG	1
CUUCCCAAG	1
CUUGGUAG	1
GUUCGGAC	1
CCUGAAAAG	1
CGUCGUCGG	1
UUUCACAAA	1
AUUGCAAAU	1
GCU(I)CGAAC	1
CUUGCCAAG	1
ACUUCAAAU	1
ACU(QUO)UA(MIA)A(PSU)	1
CCUCUCAAG	1
ACUUUUAAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUCAUAA	5
CUGAUAA	3
CUGAAAA	3
(PSU)UGCA(MIA)A	2
UUCACGU	2
CUUACAA	2
(5MC)UCAUAA	2
UUGAAAA	2
UUGAG(1MG)(PSU)	1
UUGAGG(PSU)	1
CU(U8U)UU(T6A)A	1
CU(70U)UU(12A)A	1
(OMC)U(OMU)ACAA	1
CUCUCAC	1
CUAAUCA	1
CUUAAAA	1
UUGAA(YG)A	1
CUGGAAA	1
CU(CM0)AC(6MZ)A	1
UUCCCAA	1
UUGGU(AET)A	1
UUCGG(1MG)A	1
GUCGUCG	1
UUCACAA	1
UUGCAAA	1
CU(I)CGAA	1
UUGCCAA	1
CUUCAAA	1
CU(QUO)UA(MIA)A	1
CUCUCAA	1
CUUUUAA	1

Release history

Release	4.8
Date	2026-03-25
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_81376.4 Version HL_81376.4 of this group appears in releases 4.8 to 4.8 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_81376.4 Version HL_81376.4 of this group appears in releases 4.8 to 4.8

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Csv

Json