HL_5WIT_033

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

5WIT|1|1A|G|1371, 5WIT|1|1A|U|1375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WIT_033 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.0571

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

5WIT|1|1A|G|1370
5WIT|1|1A|G|1371
5WIT|1|1A|U|1372
5WIT|1|1A|C|1373
5WIT|1|1A|G|1374
5WIT|1|1A|U|1375
5WIT|1|1A|C|1376

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17

Chain 1W

50S ribosomal protein L22