HL_5WIT_221
3D structure
- PDB id
- 5WIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UCAGGGAGA
- Length
- 9 nucleotides
- Bulged bases
- 5WIT|1|2y|G|18, 5WIT|1|2y|G|19
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5WIT_221 not in the Motif Atlas
- Homologous match to HL_6ORD_220
- Geometric discrepancy: 0.4671
- The information below is about HL_6ORD_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_96927.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5WIT|1|2y|U|12
5WIT|1|2y|C|13
5WIT|1|2y|A|14
5WIT|1|2y|G|15
5WIT|1|2y|G|18
5WIT|1|2y|G|19
5WIT|1|2y|A|21
5WIT|1|2y|G|22
5WIT|1|2y|A|23
Current chains
- Chain 2y
- E-site tRNA
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: