HL_5WIT_228
3D structure
- PDB id
- 5WIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CCUACGGG
- Length
- 8 nucleotides
- Bulged bases
- 5WIT|1|1a|A|344
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5WIT_228 not in the Motif Atlas
- Geometric match to HL_7MLW_004
- Geometric discrepancy: 0.373
- The information below is about HL_7MLW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_83003.1
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5WIT|1|1a|C|341
5WIT|1|1a|C|342
5WIT|1|1a|U|343
5WIT|1|1a|A|344
5WIT|1|1a|C|345
5WIT|1|1a|G|346
5WIT|1|1a|G|347
5WIT|1|1a|G|348
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1O
- 50S ribosomal protein L14
- Chain 1T
- 50S ribosomal protein L19
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